Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 511 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  103 bits (256), Expect = 2e-26
 Identities = 99/374 (26%), Positives = 172/374 (45%), Gaps = 46/374 (12%)

Query: 13  INTGEGYTLEFKESL--NASLAKEICAFANSDGGHILLGVTD-SGDITGYPLSNQDDAR- 68
           I  GE   ++FKE +     +A E+ AF+NS GG +++G+ D +G+      S   +   
Sbjct: 9   IKAGEVSGVQFKERILDKYDIACELVAFSNSHGGKLVVGIKDKTGETNALSYSEVQETTN 68

Query: 69  -ITDIA-RNMDPSFSVNLEKVD----NVVVITVPKGENKPYSTG-GLYYVRNGSQSQKL- 120
            ++DIA  N+ PS  + ++ V+    N+VV TV +G NKPY    G+ +V+NG+  +K+ 
Sbjct: 69  LLSDIASENVVPSILIKIDTVEVEDGNLVVATVKEGLNKPYHDNKGIVWVKNGADKRKVF 128

Query: 121 KREEVIELFKYNGLISFEEIPNKEFDL---------------------KKDLNNSALNNF 159
              E+ E+    G  + +E   ++  +                     KK L   A N  
Sbjct: 129 DNAELAEMMTDCGSFAPDEAGVRDATVNDLDATTIKQFLGNRFERVLDKKGLTGDAFNEA 188

Query: 160 ---ITASGITNKLKKEDLLNNLYLLK-DGFLKNAGVLYFCNNSTKFFRNAHITCVLYEGT 215
              +  S I      E +L NL  ++ DG L  A +L F   + ++       C+ + G 
Sbjct: 189 SLDMICSAIAKGHDCEKILRNLRFIRPDGTLTVAAMLLFGKYTQRWMPMMTAKCICFAGN 248

Query: 216 SKSNILDRK-----DFSKDIYSNFNDSFDYICSKLNTEYIIGKE--RVERLELPKEAIRE 268
           S  + + R      D   ++   ++   D+    L+   + G E   + +LE+P  ++ E
Sbjct: 249 SVGSKVFRDKVNDADMEGNLLHQYDTIMDFFTRNLHNVQV-GDEFNSMGKLEIPYTSLVE 307

Query: 269 ALVNSIAHRDYFSSGHIQVDIFQDKLEISNPGGLVLGLSYSEL-GKRSIPRNPLLADLML 327
             VNS+ HR       +++ IF +++EI +PG L  GL+  ++    S+PRN  L +  +
Sbjct: 308 FTVNSLVHRSLNMKAPVRIFIFDNRVEIHSPGALPNGLTIDDIKAGTSMPRNTFLFNNAI 367

Query: 328 RSKLVERVGSGIIR 341
                  VGSGI R
Sbjct: 368 YLLPYTGVGSGITR 381