Pairwise Alignments

Query, 447 a.a., putative DNA binding domain-containing protein from Methanococcus maripaludis S2

Subject, 527 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 105/404 (25%), Positives = 183/404 (45%), Gaps = 52/404 (12%)

Query: 13  INTGEGYTLEFKESL--NASLAKEICAFANSDGGHILLGVTD-SGDITGYPLSNQDDARI 69
           I  GE   ++FKE L  N  +  E+ AF+N+ GG +++G  D +G+I   PLS  +    
Sbjct: 10  IKLGEVSKVQFKERLLDNYDIGCELVAFSNARGGTLVVGAVDKTGNIN--PLSYLEVQET 67

Query: 70  TDI-----ARNMDPSFSVNLEKVD----NVVVITVPKGENKPYSTG-GLYYVRNGSQSQK 119
           T+      + N+ P+  V++E +     ++VV  + +G NKPY    G+ +V+NG+  +K
Sbjct: 68  TNTLSNIASENVVPAILVDVETISVDGGSLVVAHIKEGLNKPYHDNRGIVWVKNGADKRK 127

Query: 120 L-KREEVIELFKYNGLISFEEIPNKEFDLKKDLNNSALNNFIT----------------- 161
           +    E+ E+    G  S +E   ++  +K DL+   +  F++                 
Sbjct: 128 VFDNAELAEMMTDCGSFSPDEAGVRDATIK-DLDEGTIKTFLSNKFDKVLARKGLVGDAF 186

Query: 162 --------ASGITNKLKKEDLLNNLYLLK-DGFLKNAGVLYFCNNSTKFFRNAHITCVLY 212
                    S I +    E LL NL  ++ DG +  A +L F   + ++       C+ +
Sbjct: 187 REASLDTVCSAIASGHNGEKLLRNLRFIRPDGKITVAAMLLFGKYTQRWLPMMTAKCICF 246

Query: 213 EGTSKSNILDR-KDFSKDIYSNFNDSFDYICSKL--NTEYI-IGKERVER--LELPKEAI 266
            G +      R K    DI  N    F+ I      N  +I +G E   +  LE+P  ++
Sbjct: 247 VGNNLGGTQFRDKVNDADIEGNLLHQFETIMDFFTRNLRHIQVGNEFNSQGVLEIPYTSL 306

Query: 267 REALVNSIAHRDYFSSGHIQVDIFQDKLEISNPGGLVLGLSYSELG-KRSIPRNPLLADL 325
            E  VN++ HR   ++  I++ IF D++EI +PG L  GL+  ++    S+PRN  L   
Sbjct: 307 VEFTVNALVHRSLNATAPIRIFIFDDRVEIHSPGILPNGLTVDDIVIGTSMPRNMFLFTN 366

Query: 326 MLRSKLVERVGSGIIRIRESMESYGLNCEFNVSENYFSTVLGRK 369
            +   L+   G+G   +R   E   ++   N   N F   + R+
Sbjct: 367 AIH--LLPYTGAGSGMLRALSEDVNVSFTNNDRTNEFVITINRQ 408