Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  280 bits (717), Expect = 6e-80
 Identities = 153/374 (40%), Positives = 225/374 (60%), Gaps = 6/374 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F  LGL + +L ALE  G+  PTP+Q QA+P ++ G RD++  AQTGTGKTA F +P+L
Sbjct: 2   TFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAG-RDLMAAAQTGTGKTAGFAVPLL 60

Query: 63  ETIDEH-----SRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
           + +        + + +ALIL PTRELA QV E +     +  L+ + VYGG SI+ Q+ +
Sbjct: 61  QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           LR+GV ++V TPGR+LD   +  +K   +  +VLDEAD ML++GF +++  I K++   +
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIID 237
           + LLFSAT  D+I  LA   + +   I+V  + +      Q    +  + K EL   ++ 
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMR 240

Query: 238 TEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297
             K    L+F KT+  VD +  +L   G  A+G+HGD  QA R++ LD+FK  ++ +LVA
Sbjct: 241 KHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQILVA 300

Query: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357
           TDVAARG+DI DL  VVNFD+P   E Y+HRIGRTGRAG  G AI+ V   E      I+
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAIE 360

Query: 358 KIAKTEIKREEVPD 371
            + +  + R+   D
Sbjct: 361 MLTRQTLPRQMEQD 374