Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 461 a.a., ATP-dependent 23S rRNA helicase DbpA from Pseudomonas fluorescens FW300-N2E2

 Score =  279 bits (714), Expect = 1e-79
 Identities = 147/372 (39%), Positives = 234/372 (62%), Gaps = 3/372 (0%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F  L LS  +L  LE  G+   TPIQ Q++P++++G  D++ QA+TG+GKTAAFGI +L
Sbjct: 7   AFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGM-DLIAQAKTGSGKTAAFGIGLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             I+      QAL++ PTRELA QVA+EI  + +    + V  + GG S   QI  L  G
Sbjct: 66  NPINPRFFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEHG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
             I+VGTPGRI  H+ + ++ L+ ++ ++LDEAD ML+MGF D +E+I++     ++ LL
Sbjct: 126 AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTLL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT P  I +L+  +MR    +K +       + +Q FYEI   ++ + + +++   + 
Sbjct: 186 FSATYPVGIKQLSSKFMRNPQQVKAEAFHSDAQI-EQRFYEIAPEERMDAVVKVLAHFRP 244

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              + FC TK  V E  + L  KG +A GLHGD+ Q  R++ L  F  +  +VLVATDVA
Sbjct: 245 ASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVA 304

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+DI+ L  V+N ++ ++ E ++HR+GRTGRAG++G AI+ V PSE  + + I+++ K
Sbjct: 305 ARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQK 364

Query: 362 TEIKREEVPDVK 373
           + +  +++ ++K
Sbjct: 365 SPLSWDQLDNLK 376



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 13/67 (19%), Positives = 33/67 (49%)

Query: 465 LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNE 524
           L +  G+ DK+ P  ++  ++ ++ + G  +  + +F+  ++V V    A+  L    + 
Sbjct: 390 LCIGAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAYVAVERGIAKQALQRLNDG 449

Query: 525 RRGRRSI 531
           +   RS+
Sbjct: 450 KIKGRSL 456