Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  343 bits (881), Expect = 7e-99
 Identities = 200/542 (36%), Positives = 309/542 (57%), Gaps = 26/542 (4%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F    L+  IL A+   G+  P+ IQ+Q+IPI++ G  D++GQAQTGTGKTAAF +PIL 
Sbjct: 8   FAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAG-HDMIGQAQTGTGKTAAFALPILH 66

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
            ID   R  QALILAPTRELA+QVA   ++  K    + V  VYGG  +  Q++ +R G 
Sbjct: 67  RIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKAIRNGA 126

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
           QIVV TPGR+ DH+ R    L  V+++VLDEADEML +GF+DD+E I K++   ++ +LF
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVLF 186

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SATLP SI  +A+ ++R+   +K++ +  T T  +Q+   +H+  K   +  +++ E   
Sbjct: 187 SATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFD 246

Query: 243 YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAA 302
             ++F +TK    ++A+ L  KGY A  L+GD+ Q QRE+ +D  K  +++++VATDVAA
Sbjct: 247 ALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 303 RGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAKT 362
           RG+D+  +THV N D+P +PESYVHRIGRTGRAG++G A+  V P E R  + I+++   
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366

Query: 363 EIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLE------DADPQEVL 416
           ++    +PD + ++ A+  K+ + +  ++     AD E    DLL+         P+ + 
Sbjct: 367 KVAEVRLPDAQAVLDARIKKLTNSLSPLV-----ADAESTHGDLLDRLTADIGCSPRALA 421

Query: 417 SAVLKYALKDE------------LSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGE-NV 463
           +A+L+ A   +            L  +N  +  R  +  +R  R D   R      E   
Sbjct: 422 AALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAEGRA 481

Query: 464 RLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKN 523
           R   ALG  D +  K L+  I  +  +    I  ++V + FS V +     E +L   K+
Sbjct: 482 RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKD 541

Query: 524 ER 525
            R
Sbjct: 542 TR 543