Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 459 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  277 bits (709), Expect = 5e-79
 Identities = 144/372 (38%), Positives = 237/372 (63%), Gaps = 3/372 (0%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +L LS  +L  L+  G+   TPIQ Q++P++++G  D++ QA+TG+GKTAAFGI +L
Sbjct: 5   AFSSLPLSAAMLANLDALGYAAMTPIQAQSLPVMLKG-HDLIAQAKTGSGKTAAFGIALL 63

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
           E ++      QAL+L PTRELA QVA+E+  + + +  + +  + GG SI  QI  L  G
Sbjct: 64  EPLNPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHG 123

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
             ++VGTPGR+ +H+ + T+KL+ ++ +VLDEAD ML+MGF D + EI+      ++ LL
Sbjct: 124 AHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPARRQTLL 183

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT P  I +L+ ++MR+   ++ +       + +Q FYEI    + E ++R++ + + 
Sbjct: 184 FSATYPAGIKQLSASFMRDPQQVRAEALHDDAQI-EQRFYEIDPEQRMEAVTRLLASFRP 242

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              + FC TK    E+ + L+  G +A  L+GD+ Q  R++ L  F  + ++VLVATDVA
Sbjct: 243 ESCVAFCFTKQQCQELVDHLSANGISAMALNGDLEQRDRDQVLAMFANRSLSVLVATDVA 302

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+DI+ L  V+N ++ ++ E +VHR+GRTGRAG QG A++ V P+E  + + I+K+ +
Sbjct: 303 ARGLDIDALDMVINVELARDAEIHVHRVGRTGRAGNQGLAVSLVAPAEAHRAQAIEKLQQ 362

Query: 362 TEIKREEVPDVK 373
             +  + +  +K
Sbjct: 363 APLNWQPLDGLK 374



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 465 LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTV 509
           L +  G+ DK+ P  ++  ++  + + G  +  + +F+  +FV V
Sbjct: 388 LCIGAGRKDKLRPGDILGALTGDAGIPGTQVGKIAIFDFQAFVAV 432