Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  350 bits (897), Expect = e-100
 Identities = 201/549 (36%), Positives = 319/549 (58%), Gaps = 29/549 (5%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F  LG+   +L A+   G+  P+PIQ QAIP+++ G  D++GQAQTGTGKTAAF +PIL 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGG-HDMIGQAQTGTGKTAAFALPILS 66

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
            ID   +  QALILAPTRELA+QVA   ++  K    L V  VYGG  +  Q++ +R+G 
Sbjct: 67  KIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIRQGA 126

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
           Q++V TPGR++DH+SR +  L  + ++VLDEADEML +GF+DD+E I +++   ++ +LF
Sbjct: 127 QVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVLF 186

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SATLP SI  +A+ ++RE   IK+  +  T    +Q+   +H+  K + + R+++ E +F
Sbjct: 187 SATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVE-DF 245

Query: 243 YGLI-FCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
             LI F +TK    ++A  L  KGY A  L+GD+ Q QRE+ ++  K  +++++VATDVA
Sbjct: 246 DALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  +THV N D+P +PESYVHRIGRTGRAG++G A+  V P E R  + I+++  
Sbjct: 306 ARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTN 365

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLE------DADPQEV 415
            ++    +P+ + ++ A+  K+ + +  ++     AD E    +LL+         P+ +
Sbjct: 366 QKVAEARLPNAQQVLDARIKKLTNSLAPLV-----ADAEATHGELLDKLVADIGCSPRAL 420

Query: 416 LSAVLKYALKDE-------------LSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGEN 462
            +A+L+ A   +             +  S+ ++    S R ERSG  + R     A G  
Sbjct: 421 AAALLRKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEG-R 479

Query: 463 VRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFK 522
            R    LG  D +  + L+  I  +  +    I  ++V + FS V +     E +L   K
Sbjct: 480 ARCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLGKLK 539

Query: 523 NERRGRRSI 531
           + R G + +
Sbjct: 540 DTRVGGKQL 548