Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

 Score =  348 bits (894), Expect = e-100
 Identities = 193/465 (41%), Positives = 289/465 (62%), Gaps = 14/465 (3%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F +LGLSD +++A+   G+  P+PIQ   IP L+ G RD++GQAQTGTGKTAAF +P+L 
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAG-RDVLGQAQTGTGKTAAFALPVLS 69

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
             D +    QAL+LAPTRELAIQVAE      +      V PVYGGQ   +Q+  L+RGV
Sbjct: 70  NADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGV 129

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
            +VVGTPGR++DH+ R T+ L  +  +VLDEADEML MGFIDDVE +LK +   +++ LF
Sbjct: 130 HVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALF 189

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SAT+P +I ++A+ Y+++   + +  +  T+    Q ++ +    K + L+RI++ E   
Sbjct: 190 SATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFD 249

Query: 243 YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAA 302
             +IF +TKA  +E+A +L  +G AA  ++GDM QA REKT+ + K  K+++LVATDVAA
Sbjct: 250 GMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAA 309

Query: 303 RGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAKT 362
           RG+D+  ++HV+N+DIP + ESYVHRIGRTGRAG+ G AI FV P E    + I++  + 
Sbjct: 310 RGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQ 369

Query: 363 EIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDADPQEVLSAVLKY 422
            I+  ++P V  +   +  + ++ I E L  G+     +M  DLL+  + +  + A+   
Sbjct: 370 PIEEMQLPSVDAVNDTRVARFMTRITETLAGGQI----EMYRDLLQRYESENNVPAIDIA 425

Query: 423 ALKDELSESNYKKI----GRGSQRS----ERSGRNDSRGRRSFAP 459
           A   +L + +   +     RG++      ER+ R D   R  F P
Sbjct: 426 AAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEP 470