Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  329 bits (843), Expect = 2e-94
 Identities = 190/548 (34%), Positives = 316/548 (57%), Gaps = 24/548 (4%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F +L L+  IL AL + GF +PTPIQ  AIP+L+EG RD +G+AQTGTGKTAAF +P+L 
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEG-RDALGKAQTGTGKTAAFSLPLLN 86

Query: 64  TIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRGV 122
            ++      QA+++APTRELAIQVA EI ++ +  K L V  +YGG SI  Q+R L+ G 
Sbjct: 87  KLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146

Query: 123 QIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLLF 182
            IVVGTPGR+ D I+R  + L+     +LDEADEML MGF+DDV  I++      + +LF
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 183 SATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKEF 242
           SAT+P  + ++ + ++R  + + V     T    +Q ++ +   +K E ++R+++TE+  
Sbjct: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266

Query: 243 YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVAA 302
             ++F +T+ D + +A+ L  +G+ A  LHGD+ Q+ RE+T+D  K   I++LVATDV A
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326

Query: 303 RGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAKT 362
           RG+D+  +THV N+DIP + ESY+HRIGRTGRAG++G AI  V  ++ R  + I+++ ++
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386

Query: 363 EIKREEVPDVKDIISAKKIKI---ISGIKEVLESGKYAD-CEKMASDLLEDADPQEVLSA 418
            ++  ++P    +  ++  K+   ++  KE     ++AD  EK+ + L  DA     L+A
Sbjct: 387 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDA---TTLAA 443

Query: 419 VLK----------YALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVR---- 464
           +L           Y   D + E+  ++  R  +R +     D   RR F   +       
Sbjct: 444 ILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWD 503

Query: 465 -LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKN 523
              + +G+   +  K +V  ++ +  +    I  +K+ +  +FV +  + +  +    + 
Sbjct: 504 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRK 563

Query: 524 ERRGRRSI 531
            R  ++ +
Sbjct: 564 LRIRQKEV 571