Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 442 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  280 bits (716), Expect = 8e-80
 Identities = 152/374 (40%), Positives = 225/374 (60%), Gaps = 6/374 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL + +L ALE  G+  PTP+Q QAIP ++ G RD++  AQTGTGKTA F +P+L
Sbjct: 2   TFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAG-RDLMAAAQTGTGKTAGFALPLL 60

Query: 63  ETIDEHS-----RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
           + +          + +AL+LAPTRELA QV E I        L  +  YGG SI+ Q+ +
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           LRRGV ++V TPGR+LD   +  +K   +  ++LDEAD ML++GF +++  I   +   +
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIID 237
           + LLFSAT  D I  LA   + +   I+V  + +  +   Q    +  + K +L   ++ 
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMK 240

Query: 238 TEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297
             +    L+F KT+  VD++ +RL   G  A+G+HGD  QA R++ LD+FK  ++ +LVA
Sbjct: 241 KHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVA 300

Query: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357
           TDVAARG+DI+DL  VVN D+P   E Y+HRIGRTGRAG  G AI+ V   E      I+
Sbjct: 301 TDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIE 360

Query: 358 KIAKTEIKREEVPD 371
            + +  ++R+E  D
Sbjct: 361 VLTRQTLERKEEQD 374