Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 473 a.a., ATP-dependent RNA helicase DbpA from Pseudomonas syringae pv. syringae B728a

 Score =  281 bits (718), Expect = 5e-80
 Identities = 148/367 (40%), Positives = 234/367 (63%), Gaps = 3/367 (0%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +L LS  +L  LE  G+   TPIQ Q++P++++G  D++ QA+TG+GKTAAFGI +L
Sbjct: 19  AFNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGM-DLIAQAKTGSGKTAAFGIGLL 77

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSIKGSK-RLNVFPVYGGQSIDRQIRELRRG 121
             I+      QAL++ PTRELA QVA+EI  +  S+  + V  + GG S   QI  L  G
Sbjct: 78  NPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHG 137

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
             I+VGTPGRI  H+ + ++ L+ ++ ++LDEAD ML+MGF D + +I++     ++ LL
Sbjct: 138 AHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLL 197

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT P  I +L+  +MR+   +KV+     + + +Q FYEI    + E + +++   + 
Sbjct: 198 FSATYPVGIKQLSSKFMRDPQTVKVEALHADSQI-EQIFYEISPEQRLEAVVKVLGHFRP 256

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              + FC TK  V EV + L  KG +A GLHGD+ Q  R++ L  F  +  +VLVATDVA
Sbjct: 257 TSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVA 316

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+DI+ L  V+N ++ ++ E ++HR+GRTGRAG++G A++ V PSE ++ + I+++ K
Sbjct: 317 ARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQK 376

Query: 362 TEIKREE 368
             +  ++
Sbjct: 377 APLNWQQ 383



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 35/67 (52%)

Query: 465 LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNE 524
           L +  G+ DK+ P  ++  ++ ++ + G  +  + +F+  ++V V  S A+  L+   N 
Sbjct: 402 LCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERLNNG 461

Query: 525 RRGRRSI 531
           +   +S+
Sbjct: 462 KIKGKSL 468