Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  298 bits (762), Expect = 4e-85
 Identities = 178/470 (37%), Positives = 271/470 (57%), Gaps = 16/470 (3%)

Query: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60
           M +F +LGLS ++L A+   G+T PTPIQ  AIP  ++ +RDI+G AQTGTGKTA+F +P
Sbjct: 1   MTNFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQ-RRDILGIAQTGTGKTASFVLP 59

Query: 61  ILETIDE---HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
           +L  +++    +R  + LIL PTRELA QVAE  D    + +LN+  + GG S D Q R+
Sbjct: 60  MLTLLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRK 119

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           L RG  +++ TPGR+LDH  R  + +  V  +V+DEAD ML+MGFI D+E I K +   +
Sbjct: 120 LERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTR 179

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRD--KFELLSRI 235
           + L FSAT+P  I KLA  +++  + ++V R+  T     Q F   H +D  K  +L  +
Sbjct: 180 QTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLREL 239

Query: 236 IDTEKEF-YGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294
           I ++++    +IFC  K DV E+   L+  G++   LHGDM Q  R   L  FK   I +
Sbjct: 240 IRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKL 299

Query: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354
           LVA+DVAARG+DI D++HV NFD+P + E YVHRIGRTGRAG+ G A T V   E +   
Sbjct: 300 LVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSD 359

Query: 355 YIQKIAKTEIK-----REEVPDVKDIISAKKIKIISGIKEVLES--GKYADCEKMASDLL 407
            I+K+   +++       E+P+  +   +++ +   G K+      GK     K  +   
Sbjct: 360 AIEKLIGQKVEWFNGDLSELPEPMESHDSRRDRGSDGRKDRKRERPGKVHADRKPVTASG 419

Query: 408 EDADPQEVLSAVLKYALKDELSESNYKKIGRGSQ--RSERSGRNDSRGRR 455
            + +  E +   +     +  ++S  +  GR  +  R++ +  +D+R RR
Sbjct: 420 NNTEELETVPERVDAVKIERNADSKDRHNGRSDRPGRAQNAANDDNRDRR 469