Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  277 bits (708), Expect = 8e-79
 Identities = 153/370 (41%), Positives = 222/370 (60%), Gaps = 5/370 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGLS  IL+AL+ KG+  P+PIQ QAIP+++EG RD++  AQTGTGKTA F +P+L
Sbjct: 2   SFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEG-RDLLAAAQTGTGKTAGFTLPLL 60

Query: 63  ETIDEHSR----NTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
           E + +  +      +ALIL PTRELA Q+A+ I +      L    V+GG  I  QI  L
Sbjct: 61  ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
           RRG+ I+V TPGR+LD   +  +    +  +VLDEAD ML+MGFI D++ ILK +   ++
Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            LLFSAT    I  LA   +     + V  +        Q    +    K  LL+ +   
Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRF 240

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
            +    L+FC+TK   + +  +++ +G  A  +HG+ +Q  R + L  FK   I +L+AT
Sbjct: 241 YRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIAT 300

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           D+AARGIDI++L +VVNF++P  PE YVHRIGRTGRAG  G A + V   E ++ + I++
Sbjct: 301 DIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDIER 360

Query: 359 IAKTEIKREE 368
           + K  + R+E
Sbjct: 361 LIKQSLPRKE 370