Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 637 a.a., ATP-dependent RNA helicase DeaD (RefSeq) from Shewanella amazonensis SB2B

 Score =  365 bits (936), Expect = e-105
 Identities = 209/556 (37%), Positives = 322/556 (57%), Gaps = 37/556 (6%)

Query: 2   ESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPI 61
           ++F+ LGL++ +L AL++ G+  PTPIQ  +I  L+ G+ DI+GQAQTGTGKT AF +P+
Sbjct: 6   KTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQ-DILGQAQTGTGKTGAFALPL 64

Query: 62  LETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRR 120
           L ++D +    Q L+LAPTRELA+QVAE   S  K  K  +V P+YGGQS+ +Q++ LRR
Sbjct: 65  LCSVDANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRR 124

Query: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRML 180
           G Q+VVGTPGR++DH+ R T+KL+ +  +VLDEADEML MGFIDD+E IL+     +++ 
Sbjct: 125 GPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLA 184

Query: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEK 240
           LFSAT+P+ I ++A  ++R    I +     T    +Q F ++   +K E L R+++ E 
Sbjct: 185 LFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVEN 244

Query: 241 EFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDV 300
               +IF +T+    E+A +L  +GYAA  LHGDM Q  RE+ +D+ K  K+++L+ATDV
Sbjct: 245 TEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDV 304

Query: 301 AARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIA 360
           AARG+D+  + HVVN+DIP + E+YVHRIGRTGRAG+ G AI FV   E R  + I++  
Sbjct: 305 AARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERAT 364

Query: 361 KTEIKREEVP---------------DVKDIISAKKIKIISGIKEVLESGKYADCEKMASD 405
            + I   ++P                V DI++ + +  + G    L      D E++A+ 
Sbjct: 365 NSRISPMKIPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTEQLAAA 424

Query: 406 LLEDADPQEVLSAVLKYALKDELSESNY-KKIGRG-SQRSERSGRNDSRGRRSFAPG--- 460
           LL     Q  L   L+     E    N+ ++ GRG + R+ER  RN+ R      PG   
Sbjct: 425 LLH----QVQLERPLQLPAMHERQRDNFDERTGRGQNDRAERGDRNERRRDSRPLPGNFG 480

Query: 461 -----------ENVRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTV 509
                         R  + +G+   +    +V  I+ ++++  R I  +++++  + V +
Sbjct: 481 SADTLKDNPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDL 540

Query: 510 SSSDAEIILDSFKNER 525
                + +L   K  R
Sbjct: 541 PDGMPKEVLQHLKKVR 556