Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  287 bits (735), Expect = 6e-82
 Identities = 191/512 (37%), Positives = 282/512 (55%), Gaps = 47/512 (9%)

Query: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60
           M  F +L L+ ++L+A+E+ G+ +PTPIQ  AIP  +EG RD++G AQTGTGKTA+F +P
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEG-RDVLGIAQTGTGKTASFTLP 59

Query: 61  ILETIDE---HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
           ++  +      +R  ++L+L PTRELA QVAE  D+     +L    + GG S   Q   
Sbjct: 60  MITLLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTL 119

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           + +GV +++ TPGR+LDH  R  + L +V  +V+DEAD ML+MGFI D+E I       +
Sbjct: 120 IDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTR 179

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQS--FYEIHSRD-----KFE 230
           + L FSAT+   I ++   ++     ++V RQ  T+    Q    ++   RD     K +
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRK 239

Query: 231 LLSRIIDTEKE--FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFK 288
           LL  +ID E E     +IFC  K DVD VA  L + GY A  +HGD+ Q+QR KTL+ F+
Sbjct: 240 LLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFR 299

Query: 289 GKKINVLVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPS 348
              +  LVA+DVAARG+D+  ++HV NFD+P + E YVHRIGRTGRAG+ G A+    P 
Sbjct: 300 EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPK 359

Query: 349 EFRKFKYIQKIAKTEIKREEVP-----------DVKDIISAKKIK----------IISGI 387
           + +  + I+++ + EI R E P           D KD  S++  +            S  
Sbjct: 360 DEKNLEDIERLVQNEIPRIENPLKKAKAEPKAKDSKDDASSETTERKTRSRRPSARSSAA 419

Query: 388 KEVLESGKYADCEKMASDLLE---DADPQEVLSAVLKYAL----KDELSESNYKKIG-RG 439
           K+V ES   AD +   SD      DA  QE  +   +       K   S+S+  K G +G
Sbjct: 420 KDVNES---ADAQAQISDAPSAEVDAPAQEQKAPEQEKRASGRGKPAESKSSGPKSGQKG 476

Query: 440 SQRSERSGRNDSRG--RRSFAPGENVRLFVAL 469
           +Q+S R    + RG  R     G+++  F+AL
Sbjct: 477 NQKSGRGRGGNDRGNDRNVVGMGDHMPSFIAL 508