Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  275 bits (703), Expect = 2e-78
 Identities = 153/373 (41%), Positives = 226/373 (60%), Gaps = 7/373 (1%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F  L L   + +ALE   F+  T IQ +AIP+++ G  D++  AQTGTGKTAAF +PIL 
Sbjct: 3   FSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGV-DLMASAQTGTGKTAAFALPILA 61

Query: 64  TI------DEHSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRE 117
            +      +   +  +AL+L PTRELA+QV + I        L+   VYGG SI+ Q ++
Sbjct: 62  KLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQ 121

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           L  GV ++V TPGR+LD   R   KL+ V+ +V DEAD ML+MGF D++ E++  + +++
Sbjct: 122 LAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSER 181

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIID 237
           + LLFSATL D ++ L+  ++++   I V  Q   +   +Q  Y + S  KF LLS +I+
Sbjct: 182 QTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLIN 241

Query: 238 TEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297
                  L+F + K   D++A RL E+G  A+  HGD+ Q  RE+ L  F+  +I VLVA
Sbjct: 242 KGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLVA 301

Query: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357
           TDVAARGIDI  L +VVN+++P   + YVHRIGRTGRAGKQG A+T     +    + I+
Sbjct: 302 TDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEIE 361

Query: 358 KIAKTEIKREEVP 370
            +    + ++ +P
Sbjct: 362 ALLDKRLPQQWLP 374