Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  276 bits (707), Expect = 9e-79
 Identities = 149/373 (39%), Positives = 225/373 (60%), Gaps = 9/373 (2%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F  L L   +   L   G+   TPIQ +AIP ++ G RD++  A+TG+GKTAAF +P+L+
Sbjct: 26  FSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAG-RDLLAGAKTGSGKTAAFALPLLQ 84

Query: 64  TIDEH----SRNTQALILAPTRELAIQVAEEIDSIKG--SKRLNVFPVYGGQSIDRQIRE 117
            +         +  AL+L PTRELA QVA+   S     + R  V  V+GG S++ Q+  
Sbjct: 85  KLVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLA 144

Query: 118 LRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDK 177
           LR G  I+V TPGR+LD +    +KL  +  +VLDEAD MLN+GF +++ EILK +   K
Sbjct: 145 LRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQK 204

Query: 178 RMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIID 237
           + LLFSAT P+ ++ L    +   D ++++ Q+  +   +Q  Y ++  +K  LL+ +I 
Sbjct: 205 QTLLFSATFPEEVLSLTAKLLT--DPVEIQMQEAQSADIEQRVYTVNRSNKTALLAELIK 262

Query: 238 TEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVA 297
             +    L+F   K   D +A +L ++G +A+  HGD  Q  R + LD FK  +I VL+A
Sbjct: 263 VRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITVLIA 322

Query: 298 TDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQ 357
           TD+AARGIDI+ L  V+NF++P++P  Y+HRIGR+GRAG+ G AI+ +   E+  FK I+
Sbjct: 323 TDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFKVIE 382

Query: 358 KIAKTEIKREEVP 370
           K  K  + RE+ P
Sbjct: 383 KKNKLRLPREQYP 395