Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  280 bits (717), Expect = 7e-80
 Identities = 157/371 (42%), Positives = 217/371 (58%), Gaps = 5/371 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGLS  IL+A+  KG+  P+PIQ QAIP ++ GK D++  AQTGTGKTA F +P+L
Sbjct: 2   SFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGK-DVMAAAQTGTGKTAGFTLPLL 60

Query: 63  ETIDE----HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
           E + +     S+  +AL+L PTRELA Q+AE + +      L    V+GG  I  QI +L
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
           +RGV I+V TPGR+LD   +  +    +  +VLDEAD ML+MGFI D+++IL  +   ++
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            L+FSAT  D I  LAK  +     I V  +  T     Q    +    K   L ++I  
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
                 L+F +TK   + +A  L  KG  A  +HG+ +Q  R K L  FK   + VLVAT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           D+AARG+DI+ L  VVNFD+P  PE YVHRIGRTGRAG  G A++ V   E +    I++
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER 360

Query: 359 IAKTEIKREEV 369
           +    + R EV
Sbjct: 361 LIGKLLPRAEV 371