Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  363 bits (932), Expect = e-104
 Identities = 209/551 (37%), Positives = 319/551 (57%), Gaps = 29/551 (5%)

Query: 2   ESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPI 61
           ++F+ LGLS+ +L AL++ G+  PTPIQ  +I  L+ GK DI+GQAQTGTGKT AF +P+
Sbjct: 6   KTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGK-DILGQAQTGTGKTGAFALPL 64

Query: 62  LETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRR 120
           L  ID +    Q L+LAPTRELA+QVAE   S  K  K L+V P+YGGQS+ +Q+  LRR
Sbjct: 65  LNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRR 124

Query: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRML 180
           G QIVVGTPGR++DH+ R T+KLE ++ +VLDEADEML MGFIDD+E IL+    ++++ 
Sbjct: 125 GPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLA 184

Query: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEK 240
           LFSAT+P+ I ++A  Y++    I +     T    +Q F ++   +K E L R+++ E 
Sbjct: 185 LFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVEN 244

Query: 241 EFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDV 300
               +IF +T+    E+A +L  +GYA+  LHGDM Q  RE+ +D+ K  K+++L+ATDV
Sbjct: 245 TEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDV 304

Query: 301 AARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIA 360
           AARG+D+  + HV+N+DIP + E+YVHRIGRTGRAG+ G AI FV   E R  + I++  
Sbjct: 305 AARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERAT 364

Query: 361 KTEIKREEVP---------------DVKDIISAKKIKIISGIKEVLESGKYADCEKMASD 405
           K+ I    VP                V + I  + +  + G    L      D E +A+ 
Sbjct: 365 KSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQLCQQLEVDTEVLAAA 424

Query: 406 LLEDADPQEVLS-AVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGR---------- 454
           LL     +  L    ++   +D   E N +  G  S R+ R GR +SR            
Sbjct: 425 LLNMVQQERPLQLPPIQERQRDSRDERNSRDRGDRSDRAPR-GRRESRPTPANLGQADTL 483

Query: 455 RSFAPGENVRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDA 514
           +     +  R  + +G+   +    +V  ++ ++++  R I  +++F++ + + +     
Sbjct: 484 KDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPEGMP 543

Query: 515 EIILDSFKNER 525
           + +L   K  R
Sbjct: 544 KDVLQHLKKVR 554