Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

 Score =  340 bits (872), Expect = 8e-98
 Identities = 197/507 (38%), Positives = 290/507 (57%), Gaps = 8/507 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +L +   +L A+   G+ +PT IQ   IP L+ G  D+VG AQTGTGKTAAF IP+L
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGS-DVVGLAQTGTGKTAAFAIPML 72

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSIKGS-KRLNVFPVYGGQSIDRQIRELRRG 121
             ID  S+  QAL+L PTRELA+QVAE          +LNV P+YGG S   Q+  LRRG
Sbjct: 73  SKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRG 132

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            Q+VVGTPGR++DH+ R T+ L  V ++VLDEADEML MGF DDVE IL      K++ L
Sbjct: 133 AQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVAL 192

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P +I KL+  Y+ +   +  K +        QS+ ++    K + L+R+++ E  
Sbjct: 193 FSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVLEVEPF 250

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              ++F +TK   +E+A +L  +G++A  + GD+ QAQRE+T+   +   I++LVATDVA
Sbjct: 251 EAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVA 310

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++HV+N+DIP + ESYVHRIGRTGRAG+ G A+ FV P E    K I+K  +
Sbjct: 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATR 370

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDAD-PQEVLSAVL 420
             +   ++P V+D+ + +  K    I   L         ++  +   + D P   ++A L
Sbjct: 371 QTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAAL 430

Query: 421 KYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVRLFVALGKLDKMNPKKL 480
             A++    E+          R  R  R D   R    P +     VA+GK  K+ P  +
Sbjct: 431 --AVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRRP-DLTTYRVAVGKRHKIGPGAI 487

Query: 481 VDHISRKSDVKGRDIDDVKVFEKFSFV 507
           V  I+ +  +   D   +++   FS V
Sbjct: 488 VGAIANEGGLHRSDFGQIRIGPDFSLV 514