Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 642 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Pantoea sp. MT58

 Score =  362 bits (928), Expect = e-104
 Identities = 212/550 (38%), Positives = 321/550 (58%), Gaps = 29/550 (5%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL+ +ILE+L   G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121
             ID   +  Q L+LAPTRELA+QVAE +    K  + LNV  +YGGQ  D Q+R LR+G
Sbjct: 66  HNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            Q+VVGTPGR+LDH+ R T+ L N+  +VLDEADEML MGFI+DVE I+  +  D +  L
Sbjct: 126 PQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ K +M++   ++++    T     QS++  + R K + L R ++ E  
Sbjct: 186 FSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGR-KTDALVRFLEAEDF 244

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY +  L+GDM QA RE+TL++ K  ++++L+ATDVA
Sbjct: 245 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 304

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVN+DIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 305 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 364

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLESGKY---------------ADCEKMASDL 406
             I   E+P+ + +   +  K  + +++ LES                   D E +A+ L
Sbjct: 365 LTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLAKMQPEDEMDLETLAAAL 424

Query: 407 LEDAD--------PQEVLSAVLKYALKDELSESNYKKIGRGSQ--RSERSGRNDSRGRRS 456
           L+ A         P+    A  +Y  +DE       +  RG +  R  R  R+  R RR 
Sbjct: 425 LKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARGDRAPRENRESRDGDRPRRE 484

Query: 457 FAPGENVRLF-VALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAE 515
                 ++L+ + +G+ D +  + +V  I+ + D+  R I ++K+F   S + +      
Sbjct: 485 RRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPG 544

Query: 516 IILDSFKNER 525
            +L  F   R
Sbjct: 545 DVLQHFTRTR 554