Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  283 bits (725), Expect = 9e-81
 Identities = 156/371 (42%), Positives = 225/371 (60%), Gaps = 5/371 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF  LGLS  + +A+ ++G+  P+PIQ QAIP ++ GK D++  AQTGTGKTA F +P+L
Sbjct: 2   SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGK-DVMAAAQTGTGKTAGFTLPLL 60

Query: 63  ETIDE----HSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
           E + +     S  T+AL+L PTRELA QV E +++      L    V+GG  I+ QI +L
Sbjct: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
           R GV ++V TPGR+LD + +  +K   +  +VLDEAD ML+MGFI D+++IL  +   ++
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            L+FSAT  D I +LAK  +     I V  +    T   Q    +    K  LL ++I  
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQ 240

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
           E     L+F +TK   + +A  L +   +A  +HG+ +Q  R K L  FK  ++ VLVAT
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           D+AARG+DI+ L  VVNFD+P  PE YVHRIGRTGRAG  G A++ V   E +  K I++
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIER 360

Query: 359 IAKTEIKREEV 369
           +    ++R+EV
Sbjct: 361 LINRVLERQEV 371