Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  289 bits (739), Expect = 2e-82
 Identities = 151/374 (40%), Positives = 230/374 (61%), Gaps = 7/374 (1%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF  L L+ ++++ L + G+  PTPIQ +AIP ++  K+D++  AQTGTGKTAAF +PIL
Sbjct: 2   SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILT-KQDVMAGAQTGTGKTAAFALPIL 60

Query: 63  ETI------DEHSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIR 116
           + +      D  ++  +AL+L PTRELA+QV +          + V   YGG SI+ Q  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 117 ELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTD 176
               G+ +++ TPGR+LDH+ +  + L  ++ +V DEAD ML+MGF+D+++ +LK V   
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 177 KRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRII 236
           ++ LLFSATL DSI   +KN +R+   I+V +   T    +Q  Y I S  K E +S ++
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query: 237 DTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLV 296
            ++     LIF +TK  VD++  +LN+ G A +  HGD++Q  REK L +FK   + VLV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query: 297 ATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYI 356
           ATDVAARG+DI +L +V+NF++P   E Y+HRIGRTGRAG  G AIT     +    + +
Sbjct: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 357 QKIAKTEIKREEVP 370
           + +    + ++  P
Sbjct: 361 ETLLDKRLPQQWYP 374