Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  272 bits (696), Expect = 2e-77
 Identities = 145/376 (38%), Positives = 231/376 (61%), Gaps = 11/376 (2%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF  LG+   +   L + G+ +PTP+Q   IP ++ G RD++  A TG+GKTAAF +P+L
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSG-RDVLAGANTGSGKTAAFALPLL 68

Query: 63  ETI------DEHSRNTQALILAPTRELAIQVAEEIDSIKG--SKRLNVFPVYGGQSIDRQ 114
           + +      D+ +   + L+L PTRELA QVA+   S     + +L +   +GG S++ Q
Sbjct: 69  QRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQ 128

Query: 115 IRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174
           ++ LR G  ++V TPGR+LD ++   +KL  VS  VLDEAD ML++GF +++E++L ++ 
Sbjct: 129 MQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALP 188

Query: 175 TDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSR 234
             K+ LLFSAT P+ +  L    + +     ++ +Q +T   +Q    ++   K  LL+ 
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTI--EQRVITVNREQKTALLAH 246

Query: 235 IIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294
           +I   +    LIF   K   + +A +L+++G +AE  HGD  Q  R + LD FK  +I+V
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306

Query: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354
           L+ATD+AARGIDI+ L  V+NFD+P++P  Y+HRIGR+GRAG+ G A+T +   E+  F 
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFG 366

Query: 355 YIQKIAKTEIKREEVP 370
            I+K  K ++ RE++P
Sbjct: 367 VIEKKNKIKLVREQIP 382