Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  301 bits (770), Expect = 4e-86
 Identities = 162/372 (43%), Positives = 230/372 (61%), Gaps = 6/372 (1%)

Query: 4   FKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPILE 63
           F++     EIL A+   G+   TPIQ+QAIP +  G+ D++  AQTGTGKTAAF +PIL+
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQ-DVLASAQTGTGKTAAFALPILQ 61

Query: 64  TIDEH-----SRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
            + E+       NT+ LIL PTRELA QVAE +++       +V  +YGG  ++ Q ++L
Sbjct: 62  KMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKL 121

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
           +RG  I+V TPGR+L+H++   + L +V ++VLDEAD ML+MGF  D+++IL++V+  ++
Sbjct: 122 KRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            LLFSAT   ++ KLA   M +  +I   +Q  T     Q  Y +  R K ELLS +I  
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
           +     L+F  T+   D +   LN  G  +E +HG+  Q  R + L +F   K+ VLVAT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVAT 301

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           +VAARG+DI  L +VVNFD+P   E YVHRIGRTGRAGK G AI+FV   E R    I+K
Sbjct: 302 EVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 359 IAKTEIKREEVP 370
           +   +I+R  VP
Sbjct: 362 LIGQKIRRITVP 373