Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 653 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Klebsiella michiganensis M5al

 Score =  358 bits (918), Expect = e-103
 Identities = 214/553 (38%), Positives = 320/553 (57%), Gaps = 33/553 (5%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           +F +LGL   ILEAL   G+  P+PIQ + IP L+ G RD++G AQTG+GKTAAF +P+L
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG-RDVLGMAQTGSGKTAAFSLPLL 65

Query: 63  ETIDEHSRNTQALILAPTRELAIQVAEEI-DSIKGSKRLNVFPVYGGQSIDRQIRELRRG 121
             +D   R  Q L+LAPTRELA+QVAE + D  K  + +NV  +YGGQ  D Q+R LR+G
Sbjct: 66  NNLDPELRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125

Query: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181
            QIVVGTPGR+LDH+ R T+ L  +S +VLDEADEML MGFI+DVE I+  +    +  L
Sbjct: 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTAL 185

Query: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEKE 241
           FSAT+P++I ++ + +M+E   ++++    T     QS++  +   K E L R ++ E  
Sbjct: 186 FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDF 245

Query: 242 FYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDVA 301
              +IF +TK    EVA  L   GY++  L+GDM Q+ RE+TL++ K  ++++L+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIATDVA 305

Query: 302 ARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIAK 361
           ARG+D+  ++ VVN+DIP + ESYVHRIGRTGRAG+ G A+ FVE  E R  + I++  K
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 362 TEIKREEVPDVKDIISAKKIKIISGIKEVLES------------------GKYADCEKMA 403
             I   E+P+ + +   +  K  + +++ LES                  G+  D E +A
Sbjct: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDVETLA 425

Query: 404 SDLLEDAD--------PQEVLSAVLKYALKDELSESNYKKIGRG--SQRSERSGRN-DSR 452
           + LL+ A         P   +    ++  +D+  E    +  RG    R ERSG +   R
Sbjct: 426 AALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERSGEDRPKR 485

Query: 453 GRRSFAPGENVRLFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSS 512
            RR     E  R  + +G+ D +  + +V  I+ + D+  R I ++K+F   S + +   
Sbjct: 486 ERRDVGDMELYR--IEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG 543

Query: 513 DAEIILDSFKNER 525
               +L  F   R
Sbjct: 544 MPGEVLQHFTRTR 556