Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 450 a.a., ATP-dependent RNA helicase RhlE from Klebsiella michiganensis M5al

 Score =  287 bits (734), Expect = 7e-82
 Identities = 163/372 (43%), Positives = 233/372 (62%), Gaps = 11/372 (2%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGL+ EIL A+ ++G+  PTPIQ+QAIP +++G RD++  AQTGTGKTA F +P+L
Sbjct: 2   SFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQG-RDLMASAQTGTGKTAGFTLPLL 60

Query: 63  ETI---DEHS---RNTQALILAPTRELAIQVAEEIDSIKGSKRLNV--FPVYGGQSIDRQ 114
           + +   + H+   R  +ALIL PTRELA Q+ E +     SK LNV    V+GG SI+ Q
Sbjct: 61  QHLVQKEPHAKGRRPVRALILTPTRELAAQIGENVRDY--SKYLNVRSLVVFGGVSINPQ 118

Query: 115 IRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174
           + +LR GV I+V TPGR+LD   +  + L+ V  +VLDEAD ML+MGFI D+  +L  + 
Sbjct: 119 MMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRMLDMGFIHDIRRVLAKLP 178

Query: 175 TDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSR 234
             ++ LLFSAT  D I  LA+  +     I+V R+   +    Q  + +  + K ELLS+
Sbjct: 179 AKRQNLLFSATFSDEIKSLAEKLLHNPLEIEVARRNTASEQVSQLVHFVDKKRKRELLSQ 238

Query: 235 IIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294
           +I        L+F +TK   + +A +LN+ G  +  +HG+ +Q  R + L  FK   I V
Sbjct: 239 MIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRV 298

Query: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354
           LVATD+AARG+DI +L HVVN+++P  PE YVHRIGRTGRA   G A++ V   E +   
Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLH 358

Query: 355 YIQKIAKTEIKR 366
            I+++ K EI R
Sbjct: 359 DIERLLKKEIPR 370