Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 476 a.a., ATP-dependent RNA helicase from Caulobacter crescentus NA1000

 Score =  302 bits (773), Expect = 2e-86
 Identities = 176/470 (37%), Positives = 264/470 (56%), Gaps = 30/470 (6%)

Query: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60
           M  F +LGL+  +L+AL +KG+  PTPIQ QAIP++++GK D++G AQTGTGKTAAF +P
Sbjct: 1   MTQFSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGK-DLLGIAQTGTGKTAAFALP 59

Query: 61  ILETIDEHS-----RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQI 115
           IL+ + E       R  + L+L+PTRELA Q+AE   +      L+V  +YGG     Q+
Sbjct: 60  ILQRLAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQM 119

Query: 116 RELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVST 175
           + L  G+ ++V TPGR++DH++ ++  +      VLDEAD+ML++GF+  + +I   ++ 
Sbjct: 120 KALAGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTK 179

Query: 176 DKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRI 235
           +++ L FSAT+P  I KLA   +     + V  Q  T    DQ    I ++ K  LL+ +
Sbjct: 180 NRQNLFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAEL 239

Query: 236 IDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVL 295
                    ++F +TK   D VA  LN  G  A  +HGD TQ QRE+ L  FK  ++  L
Sbjct: 240 FADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRAL 299

Query: 296 VATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKY 355
           VATD+AARGID+ND++HV+N+++P  PE+YVHRIGRT R GK G AI+F    E    K 
Sbjct: 300 VATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKD 359

Query: 356 IQKIAKTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDADPQEV 415
           IQK  +  I   +  + K + +A  +       +++ + KY D  K        ADP+  
Sbjct: 360 IQKATRQTIPSFDRRNDKQLAAAAAV-----ADKLVPAEKYVDPRK--------ADPRNN 406

Query: 416 LSAVLKYALKDELSESNYKKIGRGSQRSE----RSGRNDSRGRRSFAPGE 461
           + + L+        + N    G G  R+E      GR   +G+    PG+
Sbjct: 407 VPSELR-------RKRNRNGGGGGGGRAEGAQKAQGRGPGQGKAGAKPGQ 449