Pairwise Alignments

Query, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  284 bits (727), Expect = 6e-81
 Identities = 173/477 (36%), Positives = 267/477 (55%), Gaps = 18/477 (3%)

Query: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
           SF +LGLS  I +A+ ++G+  P+PIQ QAIP ++ GK D++  AQTGTGKTA F +P+L
Sbjct: 2   SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGK-DVMAAAQTGTGKTAGFTLPLL 60

Query: 63  ETIDEHSR----NTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIREL 118
           E + + ++      +AL+L PTRELA QV+E +++      L    V+GG  I+ QI++L
Sbjct: 61  ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 119 RRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKR 178
           R GV ++V TPGR+LD   ++ +K   +  +VLDEAD ML+MGFI D+++IL  +   ++
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 179 MLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDT 238
            L+FSAT  D I +LAK  + +   I V  +        Q    +    K  LL ++I  
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ 240

Query: 239 EKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVAT 298
           E     L+F +TK   + +A  L +   +A  +HG+ +Q  R K L  FK  ++ VLVAT
Sbjct: 241 EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300

Query: 299 DVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQK 358
           D+AARG+DI+ L  VVNFD+P  PE YVHRIGRTGRAG  G A++ V   E +  + I++
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIER 360

Query: 359 IAKTEIKREEVPDVKDIIS-----------AKKIKIISGIKEVLESGKYADCEKMASDLL 407
           +    ++R+EV     + +             KIK ++  ++   +GK A       D  
Sbjct: 361 LINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGRDGR 420

Query: 408 EDADPQEVLSAVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVR 464
           +   P+   +  L    K + ++ N  +     QRS +  RN  + +R+   GE+ R
Sbjct: 421 KTPAPKTADNGDLAQQ-KGQNAQPNSSQRNNQGQRSHQGQRNQHQEQRNH-QGESKR 475