Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 56.2 bits (134), Expect = 5e-13
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WLN----- 79
           +   ++LY   LRV+EL+++ ++ +++ +GV +      +   + +  E   WL      
Sbjct: 137 RAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGDEALHWLERYQRE 196

Query: 80  --EDIFGHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLL 137
             +++ G    + L    R  +   +T+ W  +K + K A I    S HT R + A HLL
Sbjct: 197 GRDELLGGKARDVLFPSLRGDQMTRQTF-WHRIKLHAKVAGIATSISPHTLRHAFATHLL 255

Query: 138 NDGVPLEKVSKYLRHKSINTTMHYLKI 164
           N G  L  V   L H  ++TT  Y  I
Sbjct: 256 NHGADLRTVQMLLGHSDLSTTQIYTHI 282