Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 323 a.a., Tyrosine recombinase XerD from Xanthomonas campestris pv. campestris strain 8004

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 16/150 (10%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPE---WL------ 78
           +   +++Y   LRVSEL+T+    INL +GV ++    ++   + +  E   WL      
Sbjct: 155 RAMLELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKERLVPLGEESQHWLERYLET 214

Query: 79  -----NEDIFGHIVDNNLK-DDDRLFKFKNRTYAWELVKKYTKDAKIHKE-FSTHTFRRS 131
                +E      VD  +    D   +  +R   W LVK+Y   A I  +  S H  R S
Sbjct: 215 ARPTLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYAAVAGIDPDTVSPHGLRHS 274

Query: 132 RALHLLNDGVPLEKVSKYLRHKSINTTMHY 161
            A HLLN G  L  +   L H S++TT  Y
Sbjct: 275 FATHLLNHGADLRALQMLLGHSSLSTTQIY 304