Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 47/201 (23%)

Query: 10  LTKDELKLFIDTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTE-- 67
           LT+DE++  ++ VD K H+L  K+LYG  LR+ E + + V++I+ + G  ++   K    
Sbjct: 106 LTRDEIRRLLEIVDPK-HQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKN 164

Query: 68  -------------NFQICVIPEWLNEDIF-----GHIVDNNLKD--DDRLFKFK------ 101
                          QI +   + + D+      G  +   LK+   +  ++F+      
Sbjct: 165 RTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFP 224

Query: 102 ------------------NRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLLNDGVPL 143
                             N T   + V++  ++A I K  + HT R S A HLL  G  +
Sbjct: 225 SFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADI 284

Query: 144 EKVSKYLRHKSINTTMHYLKI 164
             V + L H  + TT  Y  +
Sbjct: 285 RTVQEQLGHTDVKTTQIYTHV 305