Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 55.5 bits (132), Expect = 9e-13
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 28  KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICV---IPEWLNEDI-- 82
           K   ++LY   LRV+EL+++ ++N++L +GV +++    +   + +     EW+   +  
Sbjct: 140 KAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIEWIETFLQQ 199

Query: 83  -----FGHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHKE-FSTHTFRRSRALHL 136
                 G    + +    R  +   +T+ W  +K Y   A I  E  S H  R + A HL
Sbjct: 200 GRSLLLGEQTSDIVFPSSRGQQMTRQTF-WHRIKHYAVIAGIDVEKLSPHVLRHAFATHL 258

Query: 137 LNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKK 171
           LN G  L  V   L H  ++TT  Y  +  + +K+
Sbjct: 259 LNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQ 293