Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 321 a.a., integrase/recombinase XerD (RefSeq) from Shewanella amazonensis SB2B

 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 10/154 (6%)

Query: 20  DTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDT--KTENFQICVIPEW 77
           D V+ ++ K   ++LY   LRVSEL+ + +  + L +G+ +++    K     +  + + 
Sbjct: 153 DPVECRD-KAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIGKGGKERLVPMGEVAQD 211

Query: 78  LNEDIFGHIVDNNLKDDDRLFKFKN-------RTYAWELVKKYTKDAKIHKEFSTHTFRR 130
             E          LK       F +       R   W  +K Y   A I  E S HT R 
Sbjct: 212 ALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLYALRAGISTELSPHTLRH 271

Query: 131 SRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKI 164
           + A HLLN G  L  V   L H S++TT  Y  +
Sbjct: 272 AFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHV 305