Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pedobacter sp. GW460-11-11-14-LB5

 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 13  DELKLFIDTVDSK--EHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQ 70
           +EL   ID   S+   +K   ++LYG  LRV+EL  + + N+       K++    +   
Sbjct: 120 NELIAGIDASKSEGMRNKAIMEVLYGCGLRVTELTELRISNVFPQIEFIKVIGKGNKERL 179

Query: 71  I---CVIPEWLNEDIFGHIVDNNLKDDDRLFKFKNRTYA-------WELVKKYTKDAKIH 120
           +    V  + L+  I    V  N+K     F F NR  A       + L+K       + 
Sbjct: 180 VPIGSVALKLLDIYINEVRVHANIKKGHEDFIFLNRFGAKLSRISIFNLIKSLAISTGLK 239

Query: 121 KEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVK 175
           K  S HT R S A HL+  G  L  V + L H SI TT  Y  I  D +++ + +
Sbjct: 240 KTISPHTLRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHIDRDYLREVITQ 294