Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score = 57.4 bits (137), Expect = 2e-13
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 12/155 (7%)

Query: 20  DTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLN 79
           D V++++  +  ++LY   LRVSEL+ + +  ++L +GV +++  K    ++    E   
Sbjct: 135 DPVEARDRAML-ELLYASGLRVSELVGLTLDQMSLRQGVVRIVG-KGSKERLVPFGEQAG 192

Query: 80  EDIFGHIVDNNL-----KDDDRLFKFKN-----RTYAWELVKKYTKDAKIHKEFSTHTFR 129
            +I  ++          K  D +F  K      R   W  +K Y + A I    S HT R
Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTLR 252

Query: 130 RSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKI 164
            + A HLLN G  L  V   L H  ++TT  Y  +
Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 287