Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 307 a.a., tyrosine recombinase XerD from Dechlorosoma suillum PS

 Score = 58.9 bits (141), Expect = 8e-14
 Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 19  IDTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQIC---VIP 75
           I+T   +  +   + LY   LRVSEL+ +++  ++ + GV ++    ++   +    V  
Sbjct: 136 IETPLGQRDRAMLETLYATGLRVSELVNLKLHEVSFDMGVARVFGKGSKERLVPLGEVAL 195

Query: 76  EWLNE---DIFGHIVDNNLKDDDRLFKF-------KNRTYAWELVKKYTKDAKIHK-EFS 124
           +WL     D    ++DN L D    F F         R   W LVKKY   A +     S
Sbjct: 196 DWLKSYLNDGRNALLDNRLSD----FLFVTARGTAMTRQMFWTLVKKYALVAGMDPARLS 251

Query: 125 THTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIK 170
            H  R + A HLLN G  L  V   L H  I+TT  Y  +  + +K
Sbjct: 252 PHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK 297