Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 371 a.a., integrase family protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 47.0 bits (110), Expect = 4e-10
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 32  KMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNEDIFGHIVDNNL 91
           ++LYG  LRVSE L + V + +   GV +++  K    ++  + +   + +   +   + 
Sbjct: 178 ELLYGSGLRVSEALELNVLDADPASGVVRVMG-KGGRERMSPLSDTARDALSAWLAVRHQ 236

Query: 92  KDDDR----LFKFK-----NRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLLNDGVP 142
            D+ R    LF        NR  A  +++     A + +  S H  R S A HLL  G  
Sbjct: 237 VDEGRGEPALFLGARGGRLNRRQAARIIETLCLRAGLPQAISPHGLRHSFATHLLEAGAD 296

Query: 143 LEKVSKYLRHKSINTTMHYLKITV 166
           L  V + L H  ++TT  Y  +T+
Sbjct: 297 LRSVQELLGHARLSTTQRYTHLTL 320