Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 290 a.a., tyrosine recombinase XerD (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 62.0 bits (149), Expect = 9e-15
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 24/182 (13%)

Query: 8   DWLTKDELKLFIDTVDSKEH-----KLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLL 62
           D LT+DE+   +   D  +      +   ++LY   LRVSEL  +   + +   G+ ++ 
Sbjct: 104 DVLTRDEMAAVLARPDLSDRLGFRDRTMLELLYASGLRVSELCGLRPLDFDPMTGLVRVF 163

Query: 63  DTKTENFQICVIPEWLNEDIFGHIVDNNLKD--------DDRLF-----KFKNRTYAWEL 109
              ++   + V       D    ++   ++D        +D LF     K   R   W++
Sbjct: 164 GKGSKERIVPV------HDTAAKLLSAYIRDWRPAFRPVEDALFLNRSGKGLTRQAVWKV 217

Query: 110 VKKYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDI 169
           VK++  +A I K+ S HTFR S A HLL+ G  L  V   L H  I  T  Y  +  D +
Sbjct: 218 VKRHVAEAGIRKDISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRL 277

Query: 170 KK 171
           ++
Sbjct: 278 RQ 279