Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score = 53.9 bits (128), Expect = 3e-12
 Identities = 46/194 (23%), Positives = 96/194 (49%), Gaps = 22/194 (11%)

Query: 3   RHYCKDWLTKDELKLFIDTVDSKEHK------LFFKMLYGMALRVSELLTIEVKNINLNE 56
           +HY  D +++ EL   I ++   + K      L  ++L+    R+SE++ ++ ++ +  E
Sbjct: 130 KHY--DAISEAELNEVIQSIVDGKSKTQIRDALVIRLLWDTGCRLSEVINLKYEDCDFKE 187

Query: 57  GVCKLLDTKTENFQICVIPEWLNEDIFGHIVDN-NLKDDDRLF-----KFKNRTYAWELV 110
           G+ KL +TK +  +     +   + +  +   N N K ++ +F     K   + +  ++ 
Sbjct: 188 GIFKLKNTKGKVERTVTCSKDTLDVLNQYKQYNPNSKPENYIFQTIEGKIIRKNWISKVF 247

Query: 111 KKYTKDAKI------HKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHY--L 162
           +++ K  K       ++   TH+ R  RA+  L+ GVP++ V +YL H S+ TT+ Y   
Sbjct: 248 REHVKKLKEKGIIARNRRLVTHSLRHGRAVDFLDKGVPIDIVKEYLGHASLETTLFYSHS 307

Query: 163 KITVDDIKKELVKI 176
           +   D + K+L K+
Sbjct: 308 RERKDKMLKDLKKL 321