Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score = 57.0 bits (136), Expect = 3e-13
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 19/161 (11%)

Query: 32  KMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNEDIFGHIVDNNL 91
           + L+    R+SE L I   + + NEG+ KL DTK    ++        E +  +   N L
Sbjct: 162 RFLWDTGARLSESLNITYGDCDFNEGLFKLRDTKGSEERMVTCSGDTLEALKHYCRFNVL 221

Query: 92  KD-DDRLFKFKNR----TYAW------ELVKKYTKDAKI--HKEFSTHTFRRSRALHLLN 138
           +  +D +F+           W        + +  ++ KI  +K    H+ R  RA+ LL+
Sbjct: 222 QGPEDTIFQTNKGGRIVKVGWIGQVFKSTIDELKQEGKIPKNKRIVVHSLRHGRAVDLLD 281

Query: 139 DGVPLEKVSKYLRHKSINTTMHYL------KITVDDIKKEL 173
            G+P+E V +YL HKSI TT+ Y       +  + DIKK L
Sbjct: 282 QGIPIEIVKEYLGHKSIETTLFYAHSKERQQKMIKDIKKML 322