Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 274 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score = 58.9 bits (141), Expect = 7e-14
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 18/145 (12%)

Query: 32  KMLYGMALRVSELLTIEVKNINLNEGVCKLLDTK--TENFQICVIPEWLNEDIFGHIVDN 89
           + L+    R+SE L +   + +L EG   L +TK   E   +C        ++  + V  
Sbjct: 115 RFLWDSECRISEALNLTYGDSDLEEGTFVLRNTKGKAERTVVCSTDTL---EVLNYYVQY 171

Query: 90  NLK--DDDRLFKFKN-----RTYAWEL----VKKYTKDAKI--HKEFSTHTFRRSRALHL 136
           N+K    DR+F+  N     R +  E+    V K  KD KI  +++   H+ R  RA+ L
Sbjct: 172 NIKKGSKDRVFQNSNGEPIGRGWIGEIFRKAVDKLKKDGKIPANRKIVVHSLRHGRAVDL 231

Query: 137 LNDGVPLEKVSKYLRHKSINTTMHY 161
           L  G P++ V +YL HKS++TT+ Y
Sbjct: 232 LEKGQPIDIVKEYLGHKSLDTTLFY 256