Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 332 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score = 52.8 bits (125), Expect = 6e-12
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 24/178 (13%)

Query: 8   DWLTKDELKLFIDTVDSKEHK------LFFKMLYGMALRVSELLTIEVKNINLNEGVCKL 61
           D++   ++K+  D  + K+ K      +F ++L+  A R  E+L I +++I+  +G+  L
Sbjct: 135 DFIEPSDVKIMCDYFEEKKEKSAFRCLVFLRVLFETAGRFGEVLKIRIRDIDFEKGIILL 194

Query: 62  LDTKTE-NFQICVIPEWLNEDI----FGHIVDNNLKDDDRLFKF---------KNRTYA- 106
            +TKT    ++ V  E  + +I    +          DD LF           KN  Y  
Sbjct: 195 RETKTSIPRKVAVSKEAKDGEIDTLTYLKFFSKGKSGDDCLFPSEDDVKKPMSKNAFYRH 254

Query: 107 WELVKKYTKDAKI---HKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHY 161
           +    +Y KD      +K  + HT R SR + LL     +  V +Y  H++I TTM Y
Sbjct: 255 YVKAVRYLKDQNPKLKNKHITVHTLRHSRIVDLLRQKHEIVLVKEYAGHENIETTMIY 312