Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 300 a.a., site-specific tyrosine recombinase XerD from Marinobacter adhaerens HP15

 Score = 64.3 bits (155), Expect = 2e-15
 Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 18/173 (10%)

Query: 8   DWLTKDELKLFIDTVD-----SKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKL- 61
           D LT+ E+   +   D         K   ++LYG  LRVSEL  + V  +NL +GV ++ 
Sbjct: 114 DSLTEGEVDALLSEPDPGIAIELRDKAMLEILYGCGLRVSELTELRVDQVNLRQGVVRIT 173

Query: 62  ----------LDTKTENFQICVIPEWLNEDIFGHIVDNNLKDDDRLFKFKNRTYAWELVK 111
                     L  +  ++ +  + E   E + G   D  L   +R      +T+ W  +K
Sbjct: 174 GKGDKERLVPLGEEAVDWLLQYMKEGRPELLKGRSCDA-LFPGNRAAAMTRQTF-WHRIK 231

Query: 112 KYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKI 164
            Y     I K  S HT R + A HLLN G  L  V   L H  ++TT  Y  +
Sbjct: 232 HYAVRVGIRKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV 284