Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 287 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 45.1 bits (105), Expect = 1e-09
 Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 28/176 (15%)

Query: 4   HYCKDWLTKDELKLFIDTVDSKEHKLFFKMLYGMALRVSELLTIEVKNIN---------L 54
           H     L+  ++   +    + + +    + YG  LRVSEL  I+V +I+          
Sbjct: 96  HKLPQLLSCQDIAALLYHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQ 155

Query: 55  NEGVCK--------LLDTKTENFQICVIPEWLNEDIFGHIVDNNLKDDDRLFKFKNRTYA 106
            +G C         LL    + +Q     EWL    +  +V          +     T+ 
Sbjct: 156 GKGACDRWVILSPTLLILLRQYWQAYHPVEWLFASTYHDVV----------YPLHESTFR 205

Query: 107 WELVKKYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYL 162
             L K   + A I K  S H+ R + A H L  G+PL ++   L H SI +T  YL
Sbjct: 206 KALAKA-ARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYL 260