Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 474 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 49.7 bits (117), Expect = 8e-11
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 21/149 (14%)

Query: 32  KMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTE-------NFQICVIPEWLNEDIFG 84
           ++LYG  LR+SE L ++V + + + GV ++L   ++       +  +  + EWL+   F 
Sbjct: 267 ELLYGSGLRISEALGLDVLDADPSAGVVRVLGKGSKERMSPLSDTSVDALREWLH---FR 323

Query: 85  HIVDNNLKD-------DDRLFKFKNRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLL 137
           H + +  +         DRL    +R  A  ++    + A + +  S H  R S A HLL
Sbjct: 324 HHLASEGERALFVGARGDRL----DRRQATRIIDALCRRAGLPQSVSPHGLRHSFATHLL 379

Query: 138 NDGVPLEKVSKYLRHKSINTTMHYLKITV 166
             G  L  V + L H  + TT  Y  +T+
Sbjct: 380 EAGADLRSVQELLGHARLATTQRYTHLTL 408