Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 372 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 7/173 (4%)

Query: 7   KDWLTKDELKLFIDT---VDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLD 63
           KD+L+ DEL    +T   +   +    F  L   +LR+S++LT+  + I       K + 
Sbjct: 198 KDYLSVDELYRLAETPCKIPVLKTASLFSCL--TSLRISDILTLRWEEIVDFAAGGKCVH 255

Query: 64  TKTENFQICVIPEWLNEDIFGHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHKEF 123
           T T+  +   I    +E +   ++  + +    +FK   R +    +K++ + A I K  
Sbjct: 256 TVTQKTKTEDIIPISDEAL--QLIGYSPEKTGLVFKGLKRCWTQYPMKEWIRAAGITKNI 313

Query: 124 STHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELVKI 176
           + H++RR+ A      G  +  +   + HKSI TT  Y+K+   + +K   KI
Sbjct: 314 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNKI 366