Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 293 a.a., integrase, site-specific recombinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 50.8 bits (120), Expect = 2e-11
 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 23/181 (12%)

Query: 9   WLTKDELKLFIDTVDSKE------HKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLL 62
           +L + E+   +D  D  E       +L   + Y   +R+SEL+ ++ K+++ +  + K+ 
Sbjct: 109 FLKESEMDKLLDDTDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVT 168

Query: 63  DTKTENFQICVIPEWLNEDIFGHIVDNN------------LKDDDRLFKFKNRTYAWELV 110
             + +  ++    + L E +  +I   N             +D +RL+K       + LV
Sbjct: 169 GKRNKQ-RLIPFGDELKELMLEYINVRNETIPERSEAFFVKEDGERLYK----NLVYNLV 223

Query: 111 KKYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIK 170
           K+        K+ S H  R + A  +LN+   L  V + L H+S+ TT  Y   T +++K
Sbjct: 224 KRNLSKVATLKKRSPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELK 283

Query: 171 K 171
           K
Sbjct: 284 K 284