Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 330 a.a., putative integrase/recombinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 41.6 bits (96), Expect = 1e-08
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 11/165 (6%)

Query: 21  TVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNE 80
           TV  ++       LY   +R SE  ++ + +I  ++  C L+    +  +    P W   
Sbjct: 154 TVQGRKDYAMLLFLYNTGVRASEAASLTIGSIIYDDASCPLVRIYGKGNKSRTCPLWNRT 213

Query: 81  DIFGHIVDNNLKDDDRLF--KFKN---RTYAWELVKKY------TKDAKIHKEFSTHTFR 129
                      ++ +R+F  ++ N   R   +EL+++       T      K  S HT R
Sbjct: 214 LNAIKPFMAGRRETERVFLNRYGNPMTRFGIYELLERNVIKATATAPTLAKKRVSPHTLR 273

Query: 130 RSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVDDIKKELV 174
            + A HL   G  +  +  +L H S+NTT  Y ++++   +K ++
Sbjct: 274 HTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVSLQMKEKAIM 318