Pairwise Alignments

Query, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 300 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella sp. ANA-3

 Score = 61.6 bits (148), Expect = 1e-14
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 20  DTVDSKEHKLFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTEN-------FQIC 72
           D V+ ++ K   ++LY   LRVSEL+ + ++ ++L +G+ +++    +          I 
Sbjct: 132 DPVECRD-KAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELAIT 190

Query: 73  VIPEWLN---EDIFGHIVDNNLKDDDRLFKFKNRTYAWELVKKYTKDAKIHKEFSTHTFR 129
            +  +L+    ++ G+I  + +    R      +T+ W  +K Y   A I  E S HT R
Sbjct: 191 EVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTF-WHRIKLYASRAGIETELSPHTLR 249

Query: 130 RSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKI 164
            + A HLLN G  L  V   L H  ++TT  Y  +
Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 284